## Genovo Server Side Tutrorial

### Folder Structure : 
```
./data/
   |-NeoChr_5_add      # NeoChr Plugin, name as "NeoChr_{weekday}"
   |---01.whole2mega       # SegmMan plugin  data
   |---02.globalREmarkup   # SegmMan plugin  data
   |---03.mega2chunk2mini  # SegmMan plugin  data
   |---chip_data  # chip design
   |---names     # prefix for search
   |---seq        # crc32 encode refsequence  name path
   |-----d7f
   |-------417
   |---------f1
   |---tracks  # track display in browser
   |-----gene  # track cluster
   |-------NeoChr  # Genome Name 
   |-----part
   |-------NeoChr
   |-----Transcript
   |-------NeoChr
```
```
 ./server/
   |-bin
   |---chip_new           # create new chip data 
   |-----ols-pool-generation-script
   |-------output-oligos-and-primers
   |---GetPrice           # fetch enzyme price
   |---segmentation       # SegmMod plugin 
   |-config               # plugins config data
   |---features            
   |---geneset
   |---globalREmarkup
   |---markers
   |---Optimize
   |-doc                    # document about plugins
   |-lib                    # library used
   |-pathway                # pathway data used 
   |-REST                   # end-side REST implement
   |-------chip
   |-------features
   |-------modify
   |-------Segmentation
   |-------stats
   |---config
   |-rewire
```

## REST API
```
base_url = server/REST/index.php

# output genes data by refname and pos
GET base_url/features/SearchByLocation?refname&start&end   
POST base_url/features/delete

# output git verison control for unroll data
GET base_url/stats/version/(?<dataset>\w+)

# get pathway resource
GET base_url/pathway/nav

# create and decouple from order genelist data
POST base_url/decouple?refname&

# add loxp, centremele, ARS and so on
POST	/modify/Add

#  SegmMod plugin 
POST 	/Segmentation/globalREmarkup
	        /Segmentation/mega2chunk2mini
	        /Segmentation/whole2mega
GET  	/Segmentation/info
	
# Nucleo plugin
POST     /NucleoMod

# chip plugin
POST	/chip/chip

GET 	/stats/config 

# for get downloadable data information
GET /data/info

```

Besides, our server side implement is flexable. User can config server side data for power usage.