hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: Pfam_fs
Sequence file: BA000019.orf9.fasta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: BA000019.orf9
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TonB_dep_Rec TonB dependent receptor 118.3 2.4e-33 1
Plug TonB-dependent Receptor Plug Domain 69.0 1.1e-19 1
Methyltrans_SAM S-adenosylmethionine-dependent methyl 4.9 0.075 1
Big_1 Bacterial Ig-like domain (group 1) 6.6 0.11 1
FmdA_AmdA Acetamidase/Formamidase family 2.3 1.3 1
DUF1794 Domain of unknown function (DUF1794) 3.0 1.6 1
GATase_3 CobB/CobQ-like glutamine amidotransfe 3.0 1.7 1
CBM_20 Starch binding domain 4.1 1.7 1
Secretin Bacterial type II and III secretion s 2.5 2.4 1
Grp1_Fun34_YaaH GPR1/FUN34/yaaH family 1.2 2.5 1
MOSP_C Major Outer Sheath Protein C-terminal 1.0 3.1 1
NRPS Nonribosomal peptide synthase 1.0 3.3 1
NODP NOTCH protein 3.6 3.4 1
UPF0228 Uncharacterised protein family (UPF02 2.4 4 1
CopC Copper resistance protein CopC 1.9 4.1 1
v110 Viral family 110 2.3 4.1 1
Phycoerythr_ab Phycoerythrin, alpha/beta chain 1.8 5.5 1
DegQ DegQ (SacQ) family 2.4 5.6 1
CHASE CHASE domain 1.2 6.3 1
Synaphin Synaphin protein 1.1 6.4 1
DUF2261 Uncharacterized conserved protein (DU -0.9 6.5 1
Gp-FAR-1 Nematode fatty acid retinoid binding