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hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: Pfam_fs Sequence file: BA000019.orf9.fasta - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: BA000019.orf9 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TonB_dep_Rec TonB dependent receptor 118.3 2.4e-33 1 Plug TonB-dependent Receptor Plug Domain 69.0 1.1e-19 1 Methyltrans_SAM S-adenosylmethionine-dependent methyl 4.9 0.075 1 Big_1 Bacterial Ig-like domain (group 1) 6.6 0.11 1 FmdA_AmdA Acetamidase/Formamidase family 2.3 1.3 1 DUF1794 Domain of unknown function (DUF1794) 3.0 1.6 1 GATase_3 CobB/CobQ-like glutamine amidotransfe 3.0 1.7 1 CBM_20 Starch binding domain 4.1 1.7 1 Secretin Bacterial type II and III secretion s 2.5 2.4 1 Grp1_Fun34_YaaH GPR1/FUN34/yaaH family 1.2 2.5 1 MOSP_C Major Outer Sheath Protein C-terminal 1.0 3.1 1 NRPS Nonribosomal peptide synthase 1.0 3.3 1 NODP NOTCH protein 3.6 3.4 1 UPF0228 Uncharacterised protein family (UPF02 2.4 4 1 CopC Copper resistance protein CopC 1.9 4.1 1 v110 Viral family 110 2.3 4.1 1 Phycoerythr_ab Phycoerythrin, alpha/beta chain 1.8 5.5 1 DegQ DegQ (SacQ) family 2.4 5.6 1 CHASE CHASE domain 1.2 6.3 1 Synaphin Synaphin protein 1.1 6.4 1 DUF2261 Uncharacterized conserved protein (DU -0.9 6.5 1 Gp-FAR-1 Nematode fatty acid retinoid binding
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